WORKSTREAM 3:
RECORDING AND UNDERSTANDING THE DYSREGULATED IMMUNE SYSTEM

A solid understanding of the immune system regulation and dysregulation is central for diagnosis, prognostic assessment, and treatment of neuroimmunological diseases.
The Clinical Neuroimmunology Lab (Prof Derfuss) studies the biology of multiple sclerosis and related diseases from two approaches. The top-down approach depends on observational studies of immunologic parameters in patients, both in response to treatment and in the natural history of the disease. The bottom-up approach involves in vitro and in vivo experimental modeling of plausible hypothetical mechanisms to explain the observations. The group is funded by SNF project grants, a Sinergia grant, as well as by the Swiss Personalized Health Initiative and grants from industry and private foundations.

First results of the top-down approach obtained in the SNF-Sinergia-funded collaboration with immunologists and computational biologists in Zürich (Nr. 10.000.065/ CRSII—222718) were published in January 2024 (Ulutekin C, Galli E, Schreiner B. Cell Rep Med. 2024). This paper analyzes the effect of B cell depletion on the immune landscape using high-dimensional single-cell immuno-phenotyping.

We will continue this approach to characterize the particular peripheral immune cell populations that are involved in the pathogenesis of MS. In one project, we will analyze the combined effects of sequential immunotherapies. Moving forward, we will focus more on the role of EBV, with one approach continuing to use the high dimensional, high throughput techniques that have been central to the collaboration thus far, and the “bottom up” approach using humanized mice to study the interaction between EBV infected B cells and the CNS in vivo.

In 2024, the group completed its flagship study of the mechanistic connection between Epstein- Barr virus (EBV) and lesion formation in MS (paper under review). A clear association between previous EBV infection and MS incidence has been well established by several groups over many years, but a mechanistic explanation for this dependency is still lacking.

By combining data from our autoreactive B cell screening pipeline with results from experiments with transgenic mouse models, and patient biopsy data obtained in collaboration with the department of Neuropathology in Freiburg/Br, we assembled a model that posits an initial CNS infection as a driver of immune cell infiltration, combined with the EBV-driven expansion of an auto reactive B cell clone. Results from animal modeling have revealed that autoreactive B cells that enter the CNS during localized inflammation are - in the absence of cognate T cell help - normally efficiently eliminated by activation- induced cell death.

The EBV protein LMP1 provides a surrogate for this T cell signaling, and leads to the survival of autoreactive, CNS-infiltrating B cells, the secretion of autoantibody, and localized demyelination. Figure 9 is a graphical abstract summarizing methods and findings.

The experimental Neuroimmunology Group's (Prof Pröbstel Anne-Katrin) current research focuses on three main topics: (I) deciphering microbial-immune cell crosstalk in MS, (II) decoding pathogenic B cell and antibody profiles in MOGAD, (III) identifying microbial and immune signatures associated with treatment (non-) response.

Achievements in 2024 include: (1) In a joint effort with the groups of Prof Gommermann (Toronto) and Prof Zipp (Mainz) and contributions from Jens Kuhle (Workstream 2), we demonstrated that elevation of BAFF following B cell depletion therapy offers neuroprotection in MS and EAE (Wang*, Lüssi*, Neziraj*, Pössnecker* et al. Science Translational Medicine, 2024) pointing towards a potential novel mode of action of anti-CD20 depleting therapies through immune regulatory responses.
(2) In experimental models Lena Siewert and Elisabeth Pössnecker identified antigen-specific activation of gut originating immune cells as a driver of autoimmune neuroinflammation with implications for the role of the microbiome in triggering autoreactive immune response in MS patients (Siewert et al., under revision).
(3) In a mutlicenter effort led by Anne-Katrin Pröbstel in collaboration with Jens Kuhle, we investigated the role of NfL and GFAP as a monitoring biomarker in MOGAD and AQP4-NMOSD (Kim SH, Gomes ABAGR, et al. JAMA Neurol. 2024).

Unraveling the Role of Immunosenescence in Multiple Sclerosis.
In the past year the research group of Prof M. Mehling (Translational Neuroimmunology) at DBM has focused on understanding the interplay between immune aging and the disease course of multiple sclerosis (MS), particularly in relation to cytomegalovirus (CMV) infection and disease-modifying treatments (DMTs). As part of the Swiss Multiple Sclerosis Cohort (SMSC) study at the University Hospital Basel, the group investigated T cell senescence profiles and their functional characteristics across various treatment groups. In a cohort of 229 persons with MS (pwMS), they characterized T cell subsets using multiparameter flow cytometry and analyzed biomarkers such as neurofilament light chain (NfL) and senescence-associated secretory phenotype (SASP) factors.  These findings highlight CMV as a significant driver of T cell senescence, independent of DMT.  Notably, we observed that CMV reactivity is linked to a less severe disease course, while CMV-antibody negative individuals exhibit stronger correlations between T cell senescence and disease activity. Additionally, the data obtained reveal distinct age-related T cell profiles across individuals treated with different DMTs, with DMF-treated patients showing differential associations between markers of T cell senescence and disease activity depending on CMV status. These findings underscore the importance of personalized therapeutic strategies that consider both immunosenescence and anti-viral reactivity. Ongoing research aims to further elucidate these complex interactions to allow for personalized MS treatment strategies improving patient outcomes.

FIGURE 1

Schematic description of the newly proposed model explain the role of Epstein Barr virus in initiating lesion formation in MS. (1) A self reactive, naive B cell is rescued into a memory-like clone by infection with the virus. (2) A CNS infection with a second, unrelated, neurotropic virus or other CNS insult provokes the influx of immune cells, including B cells from the autoreactive clone. (3) Autoreactive B cells are activated by interaction with cognate antigen, and saved from activation-induced cell death by the EBV protein LMP1. (4) Activated autoreactive B cells survive in situ and secrete autoantibodies, leading to demyelinated lesion formation. From Kim, Schneider et at., submitted.

FIGURE 2

MOG-IgA characterizes a subgroup of patients with central nervous system demyelination. (a) Flowchart of patients in the discovery and confirmation cohort who were screnned for MOG-IgA, MOG-IgG, and MOG-IgM AQP4 was tested as part of the routine clinical diagnosis. (b) Frequency of disease manifestations for patients with isolated MOG-IgA and MOG-IgG.

Core Members

> Derfuss Lab
  • High-dimensional and multi-omic investigation of immune system changes associated with treatment success, failure, and side effects
  • Hypothesis-driven investigation of mechanisms underlying disease initiation and progression
  • Animal models of disease mechanisms
  • Autoantibody isolation from patient samples, recombinant production and testing
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> Mehling Lab
  • Measurement of protective immunity under MS treatments by quantification of vaccine responses in the framework of the Swiss Multiple Sclerosis Cohort
  • Understanding the role of MS treatments on the development of immunosenescence
  • Mechanistic assessment of the role of atypical chemokine receptors in the formation of central nervous system inflammation
> Pröbstel Lab
  • Taking cues from opposing clinical trial results with B cell depleting therapies, we combine state-of-the art single cell transcriptomic and immune repertoire approaches to decode B cellular function and antigen specificity in MS and MOGAD across compartments
  • Building on recent evidence of a pivotal role of gut-originating immune responses in MS, we specifically strive to decipher mucosal origins of immune cells and their interaction with gut microbiota through analysis of stool samples and gut biopsy tissues in MS patients in combination with functional analysis in germ-free mouse models.
  • By assessing longitudinal changes of microbiota in MS before and under immunomodulatory therapy, we aim to identify microbial biomarkers of treatment (side) effects and therapy (non-)response.
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